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af5478  (R&D Systems)


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    Structured Review

    R&D Systems af5478
    Af5478, supplied by R&D Systems, used in various techniques. Bioz Stars score: 91/100, based on 7 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/af5478/Human%2FMouse%2FRat+Syntaxin+7+Antibody/pmc07567700__mmc6-295-80-86
    Average 91 stars, based on 7 article reviews
    af5478 - by Bioz Stars, 2026-09
    91/100 stars

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    Related Articles

    Immunopeptidomics:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Purification:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Control:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Virus:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Recombinant:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Mass Spectrometry:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Sample Prep:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Transfection:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    SYBR Green Assay:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Sequencing:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    CRISPR:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Plasmid Preparation:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).

    Software:

    Article Title:
    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).



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    VEGFR3 interacts with HSPA1L to alleviate oxidative stress injury by regulating PARKIN-dependent mitophagy in vitro. A HEK-293T cells were transfected with plasmids encoding FLAG-VEGFR3 and HA-HSPA1L and prepared for immunoprecipitation and immunoblotting assays with the indicated antibodies. B-G HK-2 cells were co-transfected with FLAG-VEGFR3 or FLAG-Vector together with si-NC or si-HSPA1L, and then incubated with Ang II. B , C Colocalization of PARKIN (red) and TOMM20 (green) in HK-2 cells. Scale bar, 10 μm. D-G The levels of PARKIN, LC3 and SQSTM1 in mitochondrial lysates were examined by immunoblotting. The immunoblots were statistically quantified by densitometry. H-L HK-2 cells were transfected with or without plasmids encoding FLAG-VEGFR3 and si-HSPA1L, and then cells were incubated with Ang II, in the presence or absence of 3-MA. The immunoblots were statistically quantified by densitometry. Data were from three or more independent experiments and were presented as the mean ± SEM. Data in ( C - L ) were analyzed with one-way ANOVA. ns, not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 vs. the indicated group

    Journal: Cell Communication and Signaling : CCS

    Article Title: VEGFR3 mitigates hypertensive nephropathy by enhancing mitophagy via regulating crotonylation of HSPA1L

    doi: 10.1186/s12964-025-02045-x

    Figure Lengend Snippet: VEGFR3 interacts with HSPA1L to alleviate oxidative stress injury by regulating PARKIN-dependent mitophagy in vitro. A HEK-293T cells were transfected with plasmids encoding FLAG-VEGFR3 and HA-HSPA1L and prepared for immunoprecipitation and immunoblotting assays with the indicated antibodies. B-G HK-2 cells were co-transfected with FLAG-VEGFR3 or FLAG-Vector together with si-NC or si-HSPA1L, and then incubated with Ang II. B , C Colocalization of PARKIN (red) and TOMM20 (green) in HK-2 cells. Scale bar, 10 μm. D-G The levels of PARKIN, LC3 and SQSTM1 in mitochondrial lysates were examined by immunoblotting. The immunoblots were statistically quantified by densitometry. H-L HK-2 cells were transfected with or without plasmids encoding FLAG-VEGFR3 and si-HSPA1L, and then cells were incubated with Ang II, in the presence or absence of 3-MA. The immunoblots were statistically quantified by densitometry. Data were from three or more independent experiments and were presented as the mean ± SEM. Data in ( C - L ) were analyzed with one-way ANOVA. ns, not significant, * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 vs. the indicated group

    Article Snippet: ACTB (AF7018), GAPDH (AF7021), VDAC1 (AF5478), HSPA1L (DF6662), PARKIN (AF0235), PINK1 (DF7742) antibodies and Horseradish peroxidase (HRP)–conjugated immunoglobulin G (S0001) were acquired from Affinity Biosciences (OH.USA).

    Techniques: In Vitro, Transfection, Immunoprecipitation, Western Blot, Plasmid Preparation, Incubation

    Crotonylation modification of HSPA1L at K130 by VEGFR3 is required for mitophagy regulation. A HEK-293T cells were transfected with FLAG-VEGFR3 and HA-HSPA1L and prepared for immunoprecipitation and immunoblotting. B The crotonylation modification at K130 was identified in HSPA1L by mass spectrometry. C The crotonylation of HSPA1L was assessed by immunoblotting with crotonylated lysine antibody following the HA immunomagnetic beads pulldown. in HK-2 cells expressing HSPA1L wild-type control (HA-WT), or the mutation (HA-K130R) with TSA (3 µM, 12 h) treatment. D , E HK-2 cells were transfected with plasmids encoding HSPA1L HA-WT or HA-K130R incubated with or without Ang II. Representative immunoblots of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria, as well as 3-nitrotyrosine and 8-oxo-dG in cell lysates. Immunoblots were statistically quantified by densitometry. F Alignment of sequences surrounding K130 in HSPA1L homologs from diverse species. Crotonylated lysine residue at HSPA1L-K130 are highlighted (red). G-H HK-2 cells were co-transfected with FLAG-VEGFR3 or FLAG-Vector together with HA-WT or HA-K130R, and then incubated with Ang II. Immunoblotting analysis and quantitative results of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria, and 3-nitrotyrosine in cell lysates. Data were from three independent experiments. Data in ( E ) and ( H ) were analyzed with one-way ANOVA. ns, not significant, * P < 0.05, ** P < 0.01, *** P < 0.001 vs. the indicated group. I , J VEGFR3 contains three functional domains, including the Ig-like (IGI), Protein kinase (KD) and Disordered (DIS) domains. Full-length or truncated Flag-tagged VEGFR3 plasmid was transfected together with HA-HSPA1L. Total cell lysates were subjected to Co-IP with anti-FLAG antibody and immunoblotting was performed with FLAG or HA antibodies

    Journal: Cell Communication and Signaling : CCS

    Article Title: VEGFR3 mitigates hypertensive nephropathy by enhancing mitophagy via regulating crotonylation of HSPA1L

    doi: 10.1186/s12964-025-02045-x

    Figure Lengend Snippet: Crotonylation modification of HSPA1L at K130 by VEGFR3 is required for mitophagy regulation. A HEK-293T cells were transfected with FLAG-VEGFR3 and HA-HSPA1L and prepared for immunoprecipitation and immunoblotting. B The crotonylation modification at K130 was identified in HSPA1L by mass spectrometry. C The crotonylation of HSPA1L was assessed by immunoblotting with crotonylated lysine antibody following the HA immunomagnetic beads pulldown. in HK-2 cells expressing HSPA1L wild-type control (HA-WT), or the mutation (HA-K130R) with TSA (3 µM, 12 h) treatment. D , E HK-2 cells were transfected with plasmids encoding HSPA1L HA-WT or HA-K130R incubated with or without Ang II. Representative immunoblots of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria, as well as 3-nitrotyrosine and 8-oxo-dG in cell lysates. Immunoblots were statistically quantified by densitometry. F Alignment of sequences surrounding K130 in HSPA1L homologs from diverse species. Crotonylated lysine residue at HSPA1L-K130 are highlighted (red). G-H HK-2 cells were co-transfected with FLAG-VEGFR3 or FLAG-Vector together with HA-WT or HA-K130R, and then incubated with Ang II. Immunoblotting analysis and quantitative results of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria, and 3-nitrotyrosine in cell lysates. Data were from three independent experiments. Data in ( E ) and ( H ) were analyzed with one-way ANOVA. ns, not significant, * P < 0.05, ** P < 0.01, *** P < 0.001 vs. the indicated group. I , J VEGFR3 contains three functional domains, including the Ig-like (IGI), Protein kinase (KD) and Disordered (DIS) domains. Full-length or truncated Flag-tagged VEGFR3 plasmid was transfected together with HA-HSPA1L. Total cell lysates were subjected to Co-IP with anti-FLAG antibody and immunoblotting was performed with FLAG or HA antibodies

    Article Snippet: ACTB (AF7018), GAPDH (AF7021), VDAC1 (AF5478), HSPA1L (DF6662), PARKIN (AF0235), PINK1 (DF7742) antibodies and Horseradish peroxidase (HRP)–conjugated immunoglobulin G (S0001) were acquired from Affinity Biosciences (OH.USA).

    Techniques: Modification, Transfection, Immunoprecipitation, Western Blot, Mass Spectrometry, Expressing, Control, Mutagenesis, Incubation, Residue, Plasmid Preparation, Functional Assay, Co-Immunoprecipitation Assay

    The protective effect of VEGFR3 is attenuated in hypertensive mice with HSPA1L-K130R. AAV9 carried with HSPA1L-WT and HSPA1L-K130R were injected the renal pelvis of mice. 2 weeks after AAV9 transfection, these mice were infused with Ang II co-administered with VEGFC via osmotic minipumps. A Systolic BP of the indicated group mice were obtained by the tail-cuff method. B mRNA level of KIM-1 was determined in urine samples of mice. C , D Renal injury was evaluated by CRE and BUN in plasma. E , F HE staining and Masson staining were carried out to assess renal tubular injury, Scale bar, 2–200 μm. G , H The levels of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria of the renal cortex from each group mice were measured by Immunoblotting. I , J Immunoblotting analysis of 3-nitrotyrosine, 8-oxo-dG, and SOD1 protein expression levels in renal cortex and quantification. K , L Renal tissues were stained to detect MitoSOX Assay Kit (red). Scale bar, 100 μm. M Graphic abstract of the underlying mechanism. n = 5 mice per group. Data in ( A ) was performed by two-way ANOVA followed by Sidak multiple comparison test. * P < 0.05, ** P < 0.01, *** P < 0.001 vs. the HSPA1L-WT group. Data in ( B-L ) were analyzed with Student’s t-test. * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 vs. the indicated group

    Journal: Cell Communication and Signaling : CCS

    Article Title: VEGFR3 mitigates hypertensive nephropathy by enhancing mitophagy via regulating crotonylation of HSPA1L

    doi: 10.1186/s12964-025-02045-x

    Figure Lengend Snippet: The protective effect of VEGFR3 is attenuated in hypertensive mice with HSPA1L-K130R. AAV9 carried with HSPA1L-WT and HSPA1L-K130R were injected the renal pelvis of mice. 2 weeks after AAV9 transfection, these mice were infused with Ang II co-administered with VEGFC via osmotic minipumps. A Systolic BP of the indicated group mice were obtained by the tail-cuff method. B mRNA level of KIM-1 was determined in urine samples of mice. C , D Renal injury was evaluated by CRE and BUN in plasma. E , F HE staining and Masson staining were carried out to assess renal tubular injury, Scale bar, 2–200 μm. G , H The levels of PARKIN, SQSTM1and LC3 II/LC3 I in mitochondria of the renal cortex from each group mice were measured by Immunoblotting. I , J Immunoblotting analysis of 3-nitrotyrosine, 8-oxo-dG, and SOD1 protein expression levels in renal cortex and quantification. K , L Renal tissues were stained to detect MitoSOX Assay Kit (red). Scale bar, 100 μm. M Graphic abstract of the underlying mechanism. n = 5 mice per group. Data in ( A ) was performed by two-way ANOVA followed by Sidak multiple comparison test. * P < 0.05, ** P < 0.01, *** P < 0.001 vs. the HSPA1L-WT group. Data in ( B-L ) were analyzed with Student’s t-test. * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001 vs. the indicated group

    Article Snippet: ACTB (AF7018), GAPDH (AF7021), VDAC1 (AF5478), HSPA1L (DF6662), PARKIN (AF0235), PINK1 (DF7742) antibodies and Horseradish peroxidase (HRP)–conjugated immunoglobulin G (S0001) were acquired from Affinity Biosciences (OH.USA).

    Techniques: Injection, Transfection, Clinical Proteomics, Staining, Western Blot, Expressing, Mitosox Assay, Comparison

    Journal: Cell Reports

    Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation

    doi: 10.1016/j.celrep.2020.108249

    Figure Lengend Snippet:

    Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.

    Techniques: Purification, Control, Virus, Recombinant, Mass Spectrometry, Sample Prep, Transfection, SYBR Green Assay, Sequencing, CRISPR, Plasmid Preparation, Software