Immunopeptidomics:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Purification:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Control:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Virus:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Recombinant:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Mass Spectrometry:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Sample Prep:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Transfection:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
SYBR Green Assay:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Sequencing:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
CRISPR:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Plasmid Preparation:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
Software:Article Title:
Article Snippet: Polyclonal sheep-anti-STX7 antibody , R and D Systems , Cat# AF5478; RRID: AB_2239977.
Article Title: Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER APC anti-human CD262 (TRAIL-R2) antibody BioLegend Cat# 307407; RRID: AB_2204813 Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813 Rabbit anti-Mouse IgG Secondary Antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-21239; RRID: AB_2535808 Purified Mouse IgG1, k Isotype control antibody BioLegend Cat# 401401; RRID: AB_2801452 Mouse IgG2a isotype control antibody Immunotools Cat #21335021 Rabbit IgG Isotype Control Monoclonal antibody Cell Signaling Technology Cat# 3900; RRID: AB_1550038 HA tag monoclonal antibody [16B12] (DyLight 650) Abcam ab117515; RRID: AB_10999718 Anti-mouse IgG, HRP-linked antibody Cell Signaling Technology Cat# 7076; RRID: AB_330924 Anti-rabbit IgG, HRP-linked antibody Cell Signaling Technology Cat# 7074; RRID: AB_2099233 Anti-FLAG-tag M2 antibody Sigma-Aldrich Cat# F3165; RRID: AB_259529 Bacterial and Virus Strains NEB 5-alpha Competent E. coli NEB Cat# C2987 Stbl4 ElectroMax electrocompetent cells Thermo Fisher Scientific Cat#11635018 Chemicals, Peptides, and Recombinant Proteins TMT10plex Isobaric Label Reagent Thermo Fisher Scientific Cat#90110 Trypsin, Mass Spectrometry Grade Thermo Fisher Scientific Cat#90057 Phosphonoacetic acid (PAA) Sigma-Aldrich Cat# 284270 Polyinosinic–polycytidylic acid sodium salt (Poly I:C) Sigma-Aldrich Cat# P0913 Doxycycline hyclate Sigma-Aldrich Cat#D9891 Hygromycin B Invitrogen Cat#10687010 Puromycin Cayman Chemicals Cat#13884 PhosSTOP phosphatase inhibitor Roche Cat#4906845001 Critical Commercial Assays PreOmics-IST NHS Sample preparation kit PreOmics Cat#P.O.00030 TransIT-293 transfection reagent Mirus Bio Cat# MIR 2704 SYBR Green PCR Master Mix Thermo Fisher Scientific Cat#4309155 RNeasy FFPE kit QIAGEN Cat# 73504 QIAamp DNA FFPE Tissue Kit QIAGEN Cat# 56404 Deposited Data Raw proteomics data This paper PRIDE http://proteomecentral. proteomexchange.org/PXD021387 and 10.6019/PXD021387 Sequencing data from CRISPR/Cas9 screens This paper Sequence Read Archive (https://www.ncbi. nlm.nih.gov/sra)/ SRP280153 Experimental Models: Cell Lines HEK293T Lehner Lab stock N/A HuAR2T-tert (May et al., 2010) N/A HuAR2T.rKSHV.219 (Vieira and O’Hearn, 2004; Alkharsah et al., 2011).
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